AI Research Papers

AllLarge Language Models (LLMs)Computer Vision & Image GenerationAudio & Speech SynthesisPrompt Engineering & InferenceAI Agents & ReasoningModel Optimization & QuantizationOther
Other7/9/2026

Detecting Ladder Logic Bombs in IEC 61131-3 PLC Programs using ESBMC-PLC+: A Formal Verification Approach with Trigger Synthesis

A Ladder Logic Bomb (LLB) is malicious control logic in a Programmable Logic Controller (PLC) program that lies dormant until a trigger activates a payload to manipulate actuators, forge sensor readings, or deny operator control. We observe that real malicious logic hides inside function-block bodies, which existing ladder-diagram verifiers drop from their intermediate representation (IR), making bombs invisible to provers. We present ESBMC-LLB, which uses ESBMC-PLC+ as its verification engine and adds a modeling layer that exposes function-block logic and recasts bomb detection as a formal verification problem: a scan-watchdog exposes non-termination payloads, and output wiring exposes actuator-forgery payloads as safety violations. k-induction gives an unbounded proof of bomb-absence across all scans, and the bounded model checker returns a counterexample that is the trigger - guarantees that signature, anomaly, and CFG-triage detectors lack. On the public Iacobelli 2024 dataset, ESBMC-LLB detects all 30 bombs and recovers every trigger; it also detects adaptive triggers (computed, opaque-arithmetic, multi-scan) that evade CFG-triage. We also report the first semantic model-checker evaluation on PLC-Defuser's SWaT corpus: our analog extension makes the full corpus parseable; on v1.0.0, it detects 149/150 bombs (99%) with zero false positives, recovering each trigger; on a later version with nonlinear non-termination bombs, detection drops to 49% as the SMT solver times out. We conclude that semantic model checking and CFG-triage are complementary - the former gives unbounded proofs, adaptive-trigger robustness, and handles Boolean/integer and linear analog logic; the latter leads to nonlinear analog non-termination, and we delineate where each wins.

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Other7/9/2026

DrugGen 2: A disease-aware language model for enhancing drug discovery

Current computational approaches for drug design typically focus on generating molecules conditioned on specific targets or general molecular properties, often neglecting the influence of disease context on target behavior and therapeutic outcomes. To address this gap, we introduce DrugGen-2, a novel generative model that designs small molecules conditioned on both disease ontology and target protein sequences. DrugGen-2 was developed by fine-tuning a pre-trained GPT-2 model on a curated dataset of approved drugs linked to their diseases and targets, using a two-step strategy of supervised fine-tuning followed by reinforcement learning via group relative policy optimization (GRPO). This process was guided by reward functions optimizing for chemical validity, novelty, diversity, and high predicted binding affinity. When evaluated on five protein targets relevant to diabetic nephropathy, DrugGen-2 significantly outperformed baseline models (DrugGPT and DrugGen). It demonstrated a superior capacity to generate unique molecules, exhibited greater structural similarity to approved drugs, and achieved improved predicted binding affinities across all targets. Molecular docking analyses further supported these findings, identifying candidate ligands with strong binding potential, including compounds with predicted affinities (-9.917, -9.485, and -9.367) exceeding those of reference drugs such as enalapril for angiotensin-converting enzyme (-8.283). By integrating disease-specific context into molecular generation, DrugGen-2 advances AI-assisted drug discovery, offering a powerful tool for de novo design and drug repurposing that accounts for the complex interplay between diseases and molecular targets.

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Other7/9/2026

DrugGen 2: A disease-aware language model for enhancing drug discovery

Current computational approaches for drug design typically focus on generating molecules conditioned on specific targets or general molecular properties, often neglecting the influence of disease context on target behavior and therapeutic outcomes. To address this gap, we introduce DrugGen-2, a novel generative model that designs small molecules conditioned on both disease ontology and target protein sequences. DrugGen-2 was developed by fine-tuning a pre-trained GPT-2 model on a curated dataset of approved drugs linked to their diseases and targets, using a two-step strategy of supervised fine-tuning followed by reinforcement learning via group relative policy optimization (GRPO). This process was guided by reward functions optimizing for chemical validity, novelty, diversity, and high predicted binding affinity. When evaluated on five protein targets relevant to diabetic nephropathy, DrugGen-2 significantly outperformed baseline models (DrugGPT and DrugGen). It demonstrated a superior capacity to generate unique molecules, exhibited greater structural similarity to approved drugs, and achieved improved predicted binding affinities across all targets. Molecular docking analyses further supported these findings, identifying candidate ligands with strong binding potential, including compounds with predicted affinities (-9.917, -9.485, and -9.367) exceeding those of reference drugs such as enalapril for angiotensin-converting enzyme (-8.283). By integrating disease-specific context into molecular generation, DrugGen-2 advances AI-assisted drug discovery, offering a powerful tool for de novo design and drug repurposing that accounts for the complex interplay between diseases and molecular targets.

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Other7/9/2026

HoloTetSphere: Unified TetSphere Mesh Reconstruction for Physical Simulations

Standard pipelines for physics-ready 3D reconstruction rely on a decoupled two-stage paradigm: extracting surface geometry followed by an error-prone tetrahedralization process. While recent Lagrangian methods like TetSphere Splatting attempt to bypass this by directly optimizing volumetric primitives, their homeomorphic constraints prevent topology-adaptive optimization. Consequently, they produce disjoint tetrahedra rather than a single connected mesh, rendering the structures unsuitable for further physical simulations. To address this, we propose a topology-adaptive framework for holistic tetrahedral mesh reconstruction through end-to-end topological and geometric optimization. First, by coupling Gaussian spheres to tetrahedral elements and leveraging edge connections, we estimate a continuous opacity field for differentiable element pruning. Next, jointly minimizing mesh smoothing energy and multi-view Gaussian rendering error drives alternating geometric refinement while preserving topological adaptivity. Consequently, our approach effectively constructs a unified and topologically coherent tetrahedral mesh. Extensive experiments demonstrate that our method outperforms state-of-the-art techniques by achieving superior geometric accuracy and producing coherent, single-connected tetrahedral meshes, thereby effectively bypassing the error-prone conventional tetrahedralization step for reconstructed surface meshes and streamlining downstream physical simulation.

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Other7/9/2026

MobiDiff: Semantic-Aware Multi-Channel Discrete Diffusion for Human Mobility Data Generation

Human mobility data are essential for transportation optimization, urban planning, and resource allocation, yet real-world mobility data are costly to collect and difficult to share due to privacy concerns. Recent diffusion-based methods have shown promise in synthesizing realistic mobility patterns, but they typically rely on continuous or latent spatio-temporal traces, limiting their ability to natively model discrete semantic events with explicit region, activity, time, and interval structures. To address this issue, we introduce MobiDiff, an end-to-end discrete diffusion framework that efficiently generates mobility data by directly denoising multi-channel semantic skeletons, avoiding the costly interpolation, latent trace construction, and coarse-to-fine realization pipelines widely used in existing diffusion-based methods. Specifically, MobiDiff decomposes each human check-in event into spatial, activity, and temporal channels, and employs structured event-, group-, and channel-level masking to jointly capture trajectory-level mobility patterns and within-event dependencies. We evaluate generation fidelity, privacy-preserving, and efficiency on three large-scale real-world datasets from Atlanta, Boston, and Seattle. Results show that MobiDiff effectively preserves trajectory length and temporal interval distributions while remaining competitive across broader mobility statistics; it is also much faster than state-of-the-art methods, e.g., 5.3$\times$ faster than GeoGen on average during inference. These findings suggest that discrete diffusion offers an interpretable and efficient framework for synthetic mobility data generation.

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Other7/9/2026

MobiDiff: Semantic-Aware Multi-Channel Discrete Diffusion for Human Mobility Data Generation

Human mobility data are essential for transportation optimization, urban planning, and resource allocation, yet real-world mobility data are costly to collect and difficult to share due to privacy concerns. Recent diffusion-based methods have shown promise in synthesizing realistic mobility patterns, but they typically rely on continuous or latent spatio-temporal traces, limiting their ability to natively model discrete semantic events with explicit region, activity, time, and interval structures. To address this issue, we introduce MobiDiff, an end-to-end discrete diffusion framework that efficiently generates mobility data by directly denoising multi-channel semantic skeletons, avoiding the costly interpolation, latent trace construction, and coarse-to-fine realization pipelines widely used in existing diffusion-based methods. Specifically, MobiDiff decomposes each human check-in event into spatial, activity, and temporal channels, and employs structured event-, group-, and channel-level masking to jointly capture trajectory-level mobility patterns and within-event dependencies. We evaluate generation fidelity, privacy-preserving, and efficiency on three large-scale real-world datasets from Atlanta, Boston, and Seattle. Results show that MobiDiff effectively preserves trajectory length and temporal interval distributions while remaining competitive across broader mobility statistics; it is also much faster than state-of-the-art methods, e.g., 5.3$\times$ faster than GeoGen on average during inference. These findings suggest that discrete diffusion offers an interpretable and efficient framework for synthetic mobility data generation.

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Other7/9/2026

TypeProbe: Recovering Type Representations from Hidden States of Pre-trained Code Models

State-of-the-art code models achieve impressive performance, yet the extent to which they internally encode type information remains poorly understood. We probe the residual streams of pretrained code models for internal type representations using a parallel dataset of Java and Python code examples. Our results show that cross-lingual type representations emerge even from untyped code. Moreover, we test whether hidden states linearly encode the result type implied by typed function application by training probes on one language to infer argument and result types in the other. Finally, we find that this structure is partly robust to lexical perturbations and cross-language syntactic variations. To the best of our knowledge, prior work on interpretability of code models has not directly targeted formal type semantics or cross-lingual type representations. We release our code and datasets.

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Other7/9/2026

Blind-Spots-Bench: Evaluating Blind Spots in Multimodal Models

Modern AI models achieve strong performance on many established benchmarks, yet they still fail on tasks that humans find almost trivial, such as manipulating a string or drawing a dog with five legs. These examples suggest that existing benchmarks may under-measure persistent blind spots in current systems. We introduce $\texttt{blind-spots-bench}$, a benchmark designed to expose such blind spots through tasks that appear simple for humans but remain challenging for modern AI. We collect raw questions from students in an AI course, clean and annotate them with structured reference solutions, and propose a task taxonomy tailored to the resulting dataset of 235 samples. We further develop an automated grading pipeline to evaluate a wide range of models, including open-weight and closed-source language, vision-language, and image-generation models. Our analysis on $\texttt{blind-spots-bench}$ reveals that closed-source frontier models can substantially outperform open-weight models with even $\approx10\%$ gap, even when they attain comparable performance on existing benchmarks. A more fine-grained analysis shows that no single model dominates across all task types, and that some tasks remain challenging for all evaluated models. These results highlight the value of $\texttt{blind-spots-bench}$ as a diagnostic stress test for identifying concrete weaknesses in current modern models.

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Other7/9/2026

Blind-Spots-Bench: Evaluating Blind Spots in Multimodal Models

Modern AI models achieve strong performance on many established benchmarks, yet they still fail on tasks that humans find almost trivial, such as manipulating a string or drawing a dog with five legs. These examples suggest that existing benchmarks may under-measure persistent blind spots in current systems. We introduce $\texttt{blind-spots-bench}$, a benchmark designed to expose such blind spots through tasks that appear simple for humans but remain challenging for modern AI. We collect raw questions from students in an AI course, clean and annotate them with structured reference solutions, and propose a task taxonomy tailored to the resulting dataset of 235 samples. We further develop an automated grading pipeline to evaluate a wide range of models, including open-weight and closed-source language, vision-language, and image-generation models. Our analysis on $\texttt{blind-spots-bench}$ reveals that closed-source frontier models can substantially outperform open-weight models with even $\approx10\%$ gap, even when they attain comparable performance on existing benchmarks. A more fine-grained analysis shows that no single model dominates across all task types, and that some tasks remain challenging for all evaluated models. These results highlight the value of $\texttt{blind-spots-bench}$ as a diagnostic stress test for identifying concrete weaknesses in current modern models.

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Other7/9/2026

RhyMix: A Lightweight Adaptive Multi-Rhythm Network for Long-Term Time Series Forecasting

Real-world time series exhibit complex dynamics characterized by multiple simultaneous temporal patterns: short-term fluctuations, periodic seasonal cycles, long-term trends, and irregular abrupt changes. However, many existing forecasting architectures rely on single-path temporal modeling--transformers capture long-range dependencies but smooth local variations, convolutions capture local patterns but have limited receptive fields, and linear models are efficient but cannot capture nonlinear dynamics. To address this, we introduce RhyMix (RHYthm MIXture), a hybrid neural architecture designed around a parallel dual-path modeling paradigm with adaptive gating mechanisms. RhyMix integrates two complementary encoding branches: (i) a Cyclic Path that incorporates explicit seasonal inductive bias through learnable cyclic embeddings, capturing predictable rhythmic patterns; and (ii) a lightweight Multi-Scale Temporal Convolutional Network with Channel Attention Path that employs multi-scale depthwise dilated convolutions to capture temporal dependencies across different receptive fields. A key innovation is the use of adaptive gating at multiple levels: a path gate dynamically combines four specialized forecasting heads (Direct, Trend-Seasonal Decomposition, Local Convolution, and Periodic Fusion) per sample and channel, while a hybrid gate adaptively balances the Cyclic and MSTCN-CA Paths based on input characteristics. This design ensures the model adapts to specific temporal patterns while maintaining linear complexity in sequence length, channels, and prediction horizon. Across extensive benchmarks on 12 real-world datasets for long-term forecasting, RhyMix achieves state-of-the-art performance on 10 of 12 datasets. The model remains lightweight (~40K params) with linear complexity and low-latency inference (<5ms),suitable for resource-constrained edge devices and real-time deployment.

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Other7/9/2026

Equivariant Quantum Clustering with Differential Privacy: Parameter-Efficient Privacy-Preserving Analysis Across Heterogeneous Sensitive Datasets

Privacy-preserving clustering is critical for analyzing sensitive data in healthcare, cybersecurity, and enterprise applications, where maintaining data confidentiality must be balanced with analytical performance. This paper presents Equivariant Quantum Clustering (EQC), a parameter-efficient framework that integrates symmetry-aware quantum circuits with differential privacy to improve the privacy-utility tradeoff. EQC employs p4m equivariant parameter sharing to reduce circuit complexity while preserving informative feature representations. The framework is evaluated on three privacy-sensitive datasets: NSL-KDD, CERT Insider Threat v6.2, and a synthetic MIMIC-III clinical dataset. On the NSL-KDD benchmark, EQC achieves 79.3% clustering accuracy while reducing membership inference attack success to 38.3% under a privacy budget of ε = 1.0 and δ = 10^-5, outperforming representative classical and quantum baselines. Ablation studies indicate that the performance gains primarily arise from parameter-efficient circuit design combined with differential privacy. The results demonstrate that EQC provides a practical quantum-ready framework for secure and privacy-preserving clustering across heterogeneous sensitive datasets.

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Other7/9/2026

Deep Learning Method for Stationary Distribution of Reflected Brownian Motion

The stationary distribution of reflected Brownian motion (RBM) plays an important role in the analysis of high-dimensional stochastic systems, yet closed-form solutions are known only for a few special cases. Computing important performance metrics, such as tail probabilities, is even more intractable, despite their practical relevance. In this paper, we develop a deep learning approach that accurately and efficiently learns the Laplace transform of high-dimensional RBMs based on the basic adjoint relationship (BAR). Our framework combines a careful design of the loss function, training data sampling procedure, and neural network architecture. We evaluate the proposed method on RBM instances with known ground-truth tail probabilities and demonstrate near-perfect prediction in high-dimensional settings, highlighting its potential as a general tool for analyzing stochastic systems beyond analytically tractable regimes. Our code can be found at https://github.com/zhangz73/NN4MGF.

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